1. N. Revaitis, R.A. Marmion, M. Farhat, V. Ekiz, W. Wang, N. Yakoby. Simple expression domains are regulated by discrete CRMs during Drosophila oogenesis. 2017. G3 7:2705-2718; early online June 20, 2017. doi:10.1534/g3.117.043810.
  2. G. Pyrowolakis, V. Veikkolainen, N. Yakoby, S.Y. Shvartsman. Gene regulation during Drosophila eggshell patterning. 2017. PNAS Jun 6;114(23):5808-5813. doi: 10.1073/pnas.1610619114. 
  3. M.G. Niepielko and N. Yakoby. Evolutionary changes in TGF-alpha distribution underlie morphological diversity in Drosophila eggshells. 2014. Development 15;141(24):4710-4715.
  4. M.G. Niepielko, R. A. Marmion, K. Kim, D. Luor, C. Ray, N. Yakoby. Chorion Patterning: A window into gene regulation and Drosophila species-relatedness. 2014. Molecular Biology & Evolution. 31 (1):154-164.
  5. R.A. Marmion, M. Jevtic, A. Springhorn, G. Pyrowolakis, and N. Yakoby. The Drosophila BMPRII, Wishful thinking, is required for eggshell patterning. 2013. Developmental Biology 375:45-53.
  6. M.G. Niepielko, K. Ip, J.S. Kanodia, D. Lun, and N. Yakoby. The evolution of BMP signaling in Drosophila oogenesis: a receptor-based mechanism. 2012. Biophysical Journal. 102:1722-1730.
  7. J.J. Zartman, L.S. Cheung, M.G. Niepielko, C. Bonini, B. Haley, N. Yakoby, and S.Y. Shvartsman. Pattern formation by a moving morphogen source. 2011. Physical Biology. Aug;8(4):045003. Epub 2011 Jul 12.
  8. M.G. Niepielko, Y. Hernáiz-Hernández, and N. Yakoby. BMP signaling dynamics in the follicle cells of multiple Drosophila species. 2011. Developmental Biology. 354:151-159.
  9. J. Lembong, N. Yakoby, and S.Y. Shvartsman. Modeling of epithelial patterning by interacting signaling pathways. 2009. PNAS. 9:3213-3218.
  10. J.J. Zartman, J.S. Kanodia, N. Yakoby, X. Schafer, C. Watson, K. Schlichting, C. Dahmann and S.Y. Shvartsman. Expression patterns of cadherin genes in Drosophila oogenesis. 2009. Gene Expression Patterns. 9(1):31-36.
  11. J.J. Zartman, N. Yakoby, C.A. Bristow, X. Zhou, K. Schlichting, C. Dahmann, and S.Y. Shvartsman. Cad74A is regulated by BR and is required for robust dorsal appendage formation in Drosophila oogenesis. 2008. Developmental Biology. 322:289-301.
  12. N. Yakoby, C.A. Bristow, D. Gong, X. Schafer, J. Lembong, J.J. Zartman, M. Halfon, T. Schupbach, and S.Y. Shvartsman. A combinatorial code for pattern formation in Drosophila oogenesis. 2008. Developmental Cell. 15:725-737. This paper was selected as a PaperPick for Dev. Cell 10th Anniversary.
  13. J. Lembong, N. Yakoby, and S.Y. Shvartsman. Spatial regulation of BMP signaling by patterned receptor expression. 2008. Tissue Engineering. 14:1469-1477.
  14. N. Yakoby, J. Lembong, T. Schüpbach, and S.Y. Shvartsman. Drosophila eggshell is patterned by sequential action of feedforward and feedback loops. 2008. Development. 135:343-351.
  15. L.A. Goentoro, N. Yakoby, J. Goodhouse, T. Schüpbach, and S.Y. Shvartsman. Fluorescence-based quantitative analysis of GAL4/UAS systems in Drosophila oogenesis. 2006. Genesis. 44:66-74.
  16. N. Yakoby, C.A. Bristow, I. Gouzman, M.P. Rossi, Y. Gogotsi, T. Schüpbach, and S.Y. Shvartsman. Systems-level questions in Drosophila oogenesis. 2005. IEE Systems Biology. 152:169-302.